Sucess in the compilation of Delft3D - Cluster Red Hat 64bits - D-Flow Flexible Mesh - Delft3D
intro story D-Flow FM
D-Flow Flexible MeshD-Flow Flexible Mesh (D-Flow FM) is the new software engine for hydrodynamical simulations on unstructured grids in 1D-2D-3D. Together with the familiar curvilinear meshes from Delft3D 4, the unstructured grid can consist of triangles, pentagons (etc.) and 1D channel networks, all in one single mesh. It combines proven technology from the hydrodynamic engines of Delft3D 4 and SOBEK 2 and adds flexible administration, resulting in:
An overview of the current developments can be found here. The D-Flow FM - team would be delighted if you would participate in discussions on the generation of meshes, the specification of boundary conditions, the running of computations, and all kinds of other relevant topics. Feel free to share your smart questions and/or brilliant solutions!
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Sucess in the compilation of Delft3D - Cluster Red Hat 64bits
LS
LUIS HENRIQUE SILVA, modified 8 Years ago.
Sucess in the compilation of Delft3D - Cluster Red Hat 64bits
Youngling Posts: 12 Join Date: 9/30/11 Recent Posts 00
Hi Fedor,
after downloading the latest "trunk" i had sucess in the compilation of Delft3D.
For the compilation of the Delft3D in a cluster with the following configuration:
- Red Hat Enterprise Linux Server release 6.1 (Santiago)
- Linux 2.6.32-robura 131.0.15.el6.x86_64 # 1 SMP Tue May 10 15:42:40 EDT 2011 x86_64 x86_64 x86_64 GNU / Linux
- Intel (R) Fortran Intel (R) 64 Compiler Professional for applications running on Intel (R) 64, Version 11.1
- MPICH2
Follow the following steps:
1. Downloaded the latest version of the "trunk"
2. Installed the package - libtool-ltdl-devel
3. Other necessary libraries, in the Webinar "How to compile under Linux Delft 3D"
4. Delete lines Makefile.am, in folder utils_lgpl/delftonline/
src / dolcli \
src / dolprint
* Solution as found in the Forum
5. Configure
CFLAGS = '-O2-fPIC-m64' CXXFLAGS = '-O2-fPIC-m64 "FFLAGS ='-O2-fPIC-m64 'FCFLAGS ='-O2-fPIC-m64 -L/usr/lib64 'LDFLAGS =-L/usr/lib64 ./configure --prefix =/delft3compilado
6. make install-ds
After following these steps, the last messages on the screen were the ones that are written plus below.
However when viewing the directory "lib" and "bin", all files have created correctly.
Therefore, put on in Bashrc the following commands:
# Delft3D
export PATH=/delft3compilado/bin:$PATH
export LD_LIBRARY_PATH=/delft3compilado/lib:$LD_LIBRARY_PATH
In test the execution of the model with the example 01_standard, I had the following result:
-------------------------------------------------- ----------------------------
FINISHED Delft3D-FLOW
runid: F34
date, time: 07.05.2012, 09:04:08
0 errors and 0 warnings
returning to main program from F34 domain
-------------------------------------------------- ----------------------------
D_Hydro [1341497048.191692] >> <anonymous> d_hydro Normally shutting down
Regards
Luis Marton
=====================================================================
Messages displayed on the screen after the compilation of Delft3d:
=====================================================================
( \
cd . ; \
./install.sh ../bin \
)
oss-install...
Target directory: ../bin
Source : all engines
installing all open source projects . . .
installing d_hydro . . .
cp: cannot stat `bin/d_hydro.exe': No such file or directory
can't copy "bin/d_hydro.exe" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for d_hydro...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing flow2d3d . . .
cp: cannot stat `lib/libflow2d3d.so': No such file or directory
can't copy "lib/libflow2d3d.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `lib/libflow2d3d_sp.so': No such file or directory
can't copy "lib/libflow2d3d_sp.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `lib/libDelftOnline.so': No such file or directory
can't copy "lib/libDelftOnline.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_create': No such file or directory
can't copy "bin/esm_create" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_delete': No such file or directory
can't copy "bin/esm_delete" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_info': No such file or directory
can't copy "bin/esm_info" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for flow2d3d...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing flow2d3d_openda . . .
cp: cannot stat `lib/libflow2d3d_openda.so': No such file or directory
can't copy "lib/libflow2d3d_openda.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `lib/libflow2d3d_openda_sp.so': No such file or directory
can't copy "lib/libflow2d3d_openda_sp.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `lib/libDelftOnline.so': No such file or directory
can't copy "lib/libDelftOnline.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_create': No such file or directory
can't copy "bin/esm_create" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_delete': No such file or directory
can't copy "bin/esm_delete" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_info': No such file or directory
can't copy "bin/esm_info" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for flow2d3d_openda...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing wave . . .
cp: cannot stat `bin/wave.exe': No such file or directory
can't copy "bin/wave.exe" to "../bin/lnx/wave/bin"
Gathering libraries for wave...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/wave/lib'
Try `cp --help' for more information.
... Finished gathering libraries
Gathering libraries for swan...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/swan/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing plugin_culvert . . .
cp: cannot stat `lib/libplugin_culvert.so': No such file or directory
can't copy "lib/libplugin_culvert.so" to "../bin/lnx/flow2d3d/bin/plugin_culvert.so"
Gathering libraries for plugin_culvert...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing plugin_delftflow_traform . . .
cp: cannot stat `lib/libplugin_delftflow_traform.so': No such file or directory
can't copy "lib/libplugin_delftflow_traform.so" to "../bin/lnx/flow2d3d/bin/plugin_delftflow_traform.so"
Gathering libraries for plugin_delftflow_traform...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing datsel . . .
cp: cannot stat `bin/datsel': No such file or directory
can't copy "bin/datsel" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for datsel...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing kubint . . .
cp: cannot stat `bin/kubint': No such file or directory
can't copy "bin/kubint" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for kubint...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing lint . . .
cp: cannot stat `bin/lint': No such file or directory
can't copy "bin/lint" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for lint...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing mormerge . . .
cp: cannot stat `bin/mormerge.exe': No such file or directory
can't copy "bin/mormerge.exe" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for mormerge...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing vs . . .
cp: cannot stat `bin/vs': No such file or directory
can't copy "bin/vs" to "../bin/lnx/util/bin"
Gathering libraries for vs...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/util/lib'
Try `cp --help' for more information.
... Finished gathering libraries
after downloading the latest "trunk" i had sucess in the compilation of Delft3D.
For the compilation of the Delft3D in a cluster with the following configuration:
- Red Hat Enterprise Linux Server release 6.1 (Santiago)
- Linux 2.6.32-robura 131.0.15.el6.x86_64 # 1 SMP Tue May 10 15:42:40 EDT 2011 x86_64 x86_64 x86_64 GNU / Linux
- Intel (R) Fortran Intel (R) 64 Compiler Professional for applications running on Intel (R) 64, Version 11.1
- MPICH2
Follow the following steps:
1. Downloaded the latest version of the "trunk"
2. Installed the package - libtool-ltdl-devel
3. Other necessary libraries, in the Webinar "How to compile under Linux Delft 3D"
4. Delete lines Makefile.am, in folder utils_lgpl/delftonline/
src / dolcli \
src / dolprint
* Solution as found in the Forum
5. Configure
CFLAGS = '-O2-fPIC-m64' CXXFLAGS = '-O2-fPIC-m64 "FFLAGS ='-O2-fPIC-m64 'FCFLAGS ='-O2-fPIC-m64 -L/usr/lib64 'LDFLAGS =-L/usr/lib64 ./configure --prefix =/delft3compilado
6. make install-ds
After following these steps, the last messages on the screen were the ones that are written plus below.
However when viewing the directory "lib" and "bin", all files have created correctly.
Therefore, put on in Bashrc the following commands:
# Delft3D
export PATH=/delft3compilado/bin:$PATH
export LD_LIBRARY_PATH=/delft3compilado/lib:$LD_LIBRARY_PATH
In test the execution of the model with the example 01_standard, I had the following result:
-------------------------------------------------- ----------------------------
FINISHED Delft3D-FLOW
runid: F34
date, time: 07.05.2012, 09:04:08
0 errors and 0 warnings
returning to main program from F34 domain
-------------------------------------------------- ----------------------------
D_Hydro [1341497048.191692] >> <anonymous> d_hydro Normally shutting down
Regards
Luis Marton
=====================================================================
Messages displayed on the screen after the compilation of Delft3d:
=====================================================================
( \
cd . ; \
./install.sh ../bin \
)
oss-install...
Target directory: ../bin
Source : all engines
installing all open source projects . . .
installing d_hydro . . .
cp: cannot stat `bin/d_hydro.exe': No such file or directory
can't copy "bin/d_hydro.exe" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for d_hydro...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing flow2d3d . . .
cp: cannot stat `lib/libflow2d3d.so': No such file or directory
can't copy "lib/libflow2d3d.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `lib/libflow2d3d_sp.so': No such file or directory
can't copy "lib/libflow2d3d_sp.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `lib/libDelftOnline.so': No such file or directory
can't copy "lib/libDelftOnline.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_create': No such file or directory
can't copy "bin/esm_create" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_delete': No such file or directory
can't copy "bin/esm_delete" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_info': No such file or directory
can't copy "bin/esm_info" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for flow2d3d...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing flow2d3d_openda . . .
cp: cannot stat `lib/libflow2d3d_openda.so': No such file or directory
can't copy "lib/libflow2d3d_openda.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `lib/libflow2d3d_openda_sp.so': No such file or directory
can't copy "lib/libflow2d3d_openda_sp.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `lib/libDelftOnline.so': No such file or directory
can't copy "lib/libDelftOnline.so" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_create': No such file or directory
can't copy "bin/esm_create" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_delete': No such file or directory
can't copy "bin/esm_delete" to "../bin/lnx/flow2d3d/bin"
cp: cannot stat `bin/esm_info': No such file or directory
can't copy "bin/esm_info" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for flow2d3d_openda...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing wave . . .
cp: cannot stat `bin/wave.exe': No such file or directory
can't copy "bin/wave.exe" to "../bin/lnx/wave/bin"
Gathering libraries for wave...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/wave/lib'
Try `cp --help' for more information.
... Finished gathering libraries
Gathering libraries for swan...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/swan/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing plugin_culvert . . .
cp: cannot stat `lib/libplugin_culvert.so': No such file or directory
can't copy "lib/libplugin_culvert.so" to "../bin/lnx/flow2d3d/bin/plugin_culvert.so"
Gathering libraries for plugin_culvert...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing plugin_delftflow_traform . . .
cp: cannot stat `lib/libplugin_delftflow_traform.so': No such file or directory
can't copy "lib/libplugin_delftflow_traform.so" to "../bin/lnx/flow2d3d/bin/plugin_delftflow_traform.so"
Gathering libraries for plugin_delftflow_traform...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing datsel . . .
cp: cannot stat `bin/datsel': No such file or directory
can't copy "bin/datsel" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for datsel...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing kubint . . .
cp: cannot stat `bin/kubint': No such file or directory
can't copy "bin/kubint" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for kubint...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing lint . . .
cp: cannot stat `bin/lint': No such file or directory
can't copy "bin/lint" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for lint...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing mormerge . . .
cp: cannot stat `bin/mormerge.exe': No such file or directory
can't copy "bin/mormerge.exe" to "../bin/lnx/flow2d3d/bin"
Gathering libraries for mormerge...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/flow2d3d/lib'
Try `cp --help' for more information.
... Finished gathering libraries
installing vs . . .
cp: cannot stat `bin/vs': No such file or directory
can't copy "bin/vs" to "../bin/lnx/util/bin"
Gathering libraries for vs...
scripts_lgpl/linux/oss-install.sh: scripts_lgpl/linux/gatherlibraries.rb: /usr/bin/ruby: bad interpreter: No such file or directory
cp: missing destination file operand after `../bin/lnx/util/lib'
Try `cp --help' for more information.
... Finished gathering libraries