Compilation of delft3d under centos 7 Can't open module file 'netcdf.mod' - D-Flow Flexible Mesh - Delft3D
intro story D-Flow FM
D-Flow Flexible MeshD-Flow Flexible Mesh (D-Flow FM) is the new software engine for hydrodynamical simulations on unstructured grids in 1D-2D-3D. Together with the familiar curvilinear meshes from Delft3D 4, the unstructured grid can consist of triangles, pentagons (etc.) and 1D channel networks, all in one single mesh. It combines proven technology from the hydrodynamic engines of Delft3D 4 and SOBEK 2 and adds flexible administration, resulting in:
An overview of the current developments can be found here. The D-Flow FM - team would be delighted if you would participate in discussions on the generation of meshes, the specification of boundary conditions, the running of computations, and all kinds of other relevant topics. Feel free to share your smart questions and/or brilliant solutions!
======================================================= | Sub groups
|
Message Boards
Compilation of delft3d under centos 7 Can't open module file 'netcdf.mod'
Gary Gatling, modified 2 Years ago.
Compilation of delft3d under centos 7 Can't open module file 'netcdf.mod'
Youngling Posts: 1 Join Date: 8/7/18 Recent PostsHello. I am trying to help a student who needs this software to work under centos 7. I know nothing about it.
First try using
./autogen.sh
./configure
make
libtool: compile: gfortran -DHAVE_CONFIG_H -I. -I../../../../.. -I../../../../../utils_lgpl/deltares_common/packages/deltares_common/src -I/include -DWITH_DELFTONLINE -g -O2 -ffree-line-length-none -cpp -c netcdf_utils.F90 -fPIC -o .libs/netcdf_utils.o
Warning: Nonexistent include directory "/include"
netcdf_utils.F90:33.4:
use netcdf
1
Fatal Error: Can't open module file 'netcdf.mod' for reading at (1): No such file or directory
make[6]: *** [netcdf_utils.lo] Error 1
...
I have installed via yum:
environment-modules-3.2.10-10.el7.x86_64
openmpi-1.10.7-1.el7.x86_64
openmpi-devel-1.10.7-1.el7.x86_64
mpich-3.0-3.0.4-10.el7.x86_64
hdf5-openmpi-1.8.12-10.el7.x86_64
netcdf-fortran-4.2-16.el7.x86_64
hdf5-mpich-1.8.12-10.el7.x86_64
netcdf-mpich-4.3.3.1-5.el7.x86_64
netcdf-openmpi-4.3.3.1-5.el7.x86_64
hdf5-openmpi-devel-1.8.12-10.el7.x86_64
netcdf-openmpi-devel-4.3.3.1-5.el7.x86_64
mpich-3.0-devel-3.0.4-10.el7.x86_64
hdf5-mpich-devel-1.8.12-10.el7.x86_64
netcdf-mpich-devel-4.3.3.1-5.el7.x86_64
netcdf-fortran-mpich-4.2-16.el7.x86_64
netcdf-fortran-openmpi-4.2-16.el7.x86_64
netcdf-fortran-openmpi-devel-4.2-16.el7.x86_64
netcdf-fortran-mpich-devel-4.2-16.el7.x86_64
netcdf-fortran-devel-4.2-16.el7.x86_64
openmpi3-3.0.0-1.el7.x86_64
openmpi3-devel-3.0.0-1.el7.x86_64
But none of it helped.
I tried downloading netcdf-4.6.1.tar.gz and built and installed it locally and set
export PKG_CONFIG_PATH=/usr/local/lib/pkgconfig
and
export PKG_CONFIG_PATH=/usr/local/lib/pkgconfig/netcdf.pc
But nothing helps. It always gives same error.
second method attempt:
./build.sh -gnu
which sets bizarre things like
export MPIFC="/opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90" (which does not exist)
20180807.200056 :: Running make ds-install &> logs/make.log
20180807.200056 :: Make fails!
in logs/make.log
/opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90 -DWITH_DELFTONLINE -O2 -ffree-line-length-none -cpp -c -o version_number.o version_number.f90
make[5]: /opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90: Command not found
Starting to give up hope that it would even be possible to compile this software on a centos 7 machine.
Does anyone know what she or I are doing wrong here? Has anyone succeeded without buying expensive intel compiler and just using gnu under centos 7 or RHEL 7?
Thank you very much.
Adri Mourits, modified 2 Years ago.
RE: Compilation of delft3d under centos 7 Can't open module file 'netcdf.m
Yoda Posts: 1221 Join Date: 1/3/11 Recent PostsHi Gary,
Does binary "/opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90" exist?
It is important that the mpich version you use is compiled with exactly the same compiler as you plan to use for Delft3D. It might be wise to download the mpich source code and compile it yourself, just to be sure.
Regards,
Adri